HomeMolecular BiologyCaspase Cascade & the Apoptotic Point of No Return

Caspase Cascade & the Apoptotic Point of No Return (2D)

Interactive 2D model of the caspase proteolytic cascade: integrate real Hill-type activation kinetics with positive feedback and XIAP inhibition, watch a live caspase-3-vs-time trace show recovery or runaway, and run a genuine bifurcation sweep of the actual ODE to find the commitment threshold.

Molecular Biology2DAdvanced60 FPS📱 Mobile-adapted⇄ 3D version
2d-apoptosis-caspase-cascade-signaling ↗ Open standalone

This 2D counterpart integrates the same real biochemical logic as its 3D twin, but on flat canvases so the underlying dynamics are easy to read: initiator caspase-9 cleaves procaspase-3 into active executioner caspase-3 through cooperative Hill-type kinetics, caspase-3 loops back to activate more caspase-9 in a positive-feedback amplifier, and XIAP continuously fights to neutralize every active caspase-3 molecule while SMAC/DIABLO blunts that defense. A five-variable ODE — procaspase-9, active caspase-9, procaspase-3, active caspase-3 and free XIAP — is integrated live with 4th-order Runge–Kutta, driving both a particle-cloud view of the cytoplasm and a live caspase-3-vs-time trace that shows real recovery below threshold or real runaway above it. A dedicated bifurcation panel sweeps the actual ODE forward and backward through signal strength to trace out the genuine hysteresis loop and locate the numerically-found commitment threshold — the molecular point of no return, computed rather than scripted.

⚙ Under the hood

Simulate the caspase-9 to caspase-3 proteolytic amplification loop against XIAP inhibition and watch a cell tip past the bistable commitment threshold that makes apoptosis irreversible.

apoptosiscaspasecell biologysignaling cascadebistabilityXIAP

2D · HTML5 Canvas 2D · 60 FPS target · runs fully client-side, no install

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