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Ramachandran Torsion-Angle Explorer (2D)

Build a peptide backbone residue by residue in a 2D canvas: the real NeRF internal-coordinate method places every backbone atom in 3D, you drag to rotate the projected chain, edit phi/psi torsion angles, and a live Ramachandran plot classifies the conformation as favored, allowed, or a real steric clash.

Structural Biology & Biophysics2DModerate60 FPS📱 Mobile-adapted⇄ 3D version
2d-protein-chemistry ↗ Open standalone

Every protein backbone is built from the same rigid peptide unit repeated over and over, so its entire 3D shape reduces to two rotatable dihedral angles per residue — φ (phi) and ψ (psi). This 2D-canvas simulator constructs a real peptide backbone atom-by-atom in 3D using the NeRF internal-coordinate method (the same technique structure-prediction tools use), projects it onto the canvas so you can drag to rotate the view, lets you drag φ/ψ for any residue or apply a whole-chain preset (α-helix, β-strand, polyproline-II), and mirrors every change on a live Ramachandran plot that shows whether the current conformation sits in a sterically favored basin, an allowed edge region, or a disallowed zone where the 3D model itself develops a real atomic clash.

⚙ Under the hood

Build a peptide backbone residue by residue in a 2D canvas: the real NeRF internal-coordinate method places every backbone atom in 3D, you drag to rotate the projected chain, edit phi/psi torsion angles, and a live Ramachandran plot classifies the conformation as favored, allowed, or a real steric clash.

protein chemistryramachandran plotstructural biologypeptide backbonebiophysics2D

2D · HTML5 Canvas 2D · 60 FPS target · runs fully client-side, no install

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