HomeMolecular BiologyAntibody Avidity: Bivalent Antigen Binding

Antibody Avidity: Bivalent Antigen Binding

Interactive 3D biosensor model of a bivalent IgG antibody re-engaging antigen with its second Fab arm after the first releases -- watch avidity lower the effective off-rate far below the intrinsic per-arm koff, and compare against a monovalent Fab fragment.

Molecular Biology3DModerate60 FPS📱 Mobile-adapted⇄ 2D version
biosensor-antibody-antigen-binding ↗ Open standalone

A biosensor surface coated with antigen holds a population of antibodies, each rendered with a hinge and two Fab arms that reach down to bind antigen sites in real time. Every antibody follows a real continuous-time Markov process with association rate kon[Ag] and per-arm dissociation rate koff: once one Fab arm is bound, the second can locally re-engage a neighbouring antigen molecule at rate kreb before the first arm has a chance to fully let go. Toggle between a bivalent IgG and a monovalent Fab fragment, switch between Inject and Wash phases, and watch the live-measured effective off-rate confirm the closed-form eigenvalue prediction for how avidity turns a weak per-arm bond into a functionally tight interaction.

⚙ Under the hood

Watch a bivalent IgG antibody's second Fab arm locally re-engage antigen after the first releases, driving the effective off-rate far below the intrinsic per-arm koff -- toggle to a monovalent Fab fragment to see the avidity effect disappear.

antibodyaviditybiosensorimmunologybinding kineticsThree.js

3D · Three.js / WebGL renderer · 60 FPS target · runs fully client-side, no install

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