HomeMolecular BiologyProtein Interaction Network Robustness — 2D Percolation

Protein Interaction Network Robustness — 2D Percolation View

Interactive 2D simulation of a scale-free protein-protein interaction network: a genuine 2D force-directed layout plus a live percolation curve tracking the giant component against the Molloy-Reed collapse threshold as proteins are knocked out.

Molecular Biology2DModerate60 FPS📱 Mobile-adapted⇄ 3D version
2d-network-biology ↗ Open standalone

Protein-protein interaction networks inside a cell are scale-free: a handful of hub proteins carry a disproportionate share of all interactions, while most proteins connect to only one or two partners. This 2D companion grows the same real Barabási–Albert scale-free network, lays it out with an independent 2D force-directed physics engine, and adds a live percolation chart that tracks the giant connected component's size against the analytic Molloy–Reed collapse threshold as you knock proteins out — either uniformly at random or by targeting the current highest-degree hub. The result quantifies, rather than just illustrates, the landmark network-biology finding that these networks tolerate random protein loss far better than they tolerate targeted hub removal.

⚙ Under the hood

A 2D companion to the scale-free protein-interaction network sim: an independent 2D force-directed layout plus a live percolation curve tracking the giant component against the analytic Molloy-Reed collapse threshold as proteins are knocked out.

network biologyprotein interactionscale-free networkpercolationsystems biologygraph theorymolecular biology

2D · HTML5 Canvas 2D · 60 FPS target · runs fully client-side, no install

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