HomeMolecular BiologyGut Microbiome: Spatial Competing-Guilds Map

Gut Microbiome: Spatial Competing-Guilds Map

Interactive 2D reaction-diffusion simulator: two competing gut-bacteria guilds (fiber-fermenters vs protein-fermenters) spread and fight for territory across a petri-dish grid under real Lotka-Volterra competition kinetics, showing how diet, competition strength and antibiotic shocks flip the whole colony between alternative stable states.

Molecular Biology2DAdvanced60 FPS📱 Mobile-adapted⇄ 3D version
2d-microbiome ↗ Open standalone

The gut microbiome doesn't drift smoothly between compositions — it tends to settle into one of a small number of self-reinforcing configurations and resist leaving. This simulator renders that behavior as a live 2D reaction-diffusion field: two competing bacterial guilds spread, diffuse and outcompete each other across a petri-dish grid under real Lotka-Volterra competition kinetics, so the whole colony's fate emerges from thousands of interacting grid cells rather than a single rolling ball. Push the diet slider far enough and one guild's resource ceiling collapses outright; fire an antibiotic pulse and, because a real course doesn't hit every patch of the colony equally, the community can resettle permanently into the other guild's territory — a concrete illustration of why microbiome recovery after antibiotics is so often incomplete.

⚙ Under the hood

Watch two competing gut-bacteria guilds (fiber-fermenters vs protein-fermenters) spread and fight for territory across a live 2D reaction-diffusion grid under real Lotka-Volterra competition kinetics, and see how diet, competitive-exclusion strength and antibiotic shocks flip the whole colony between alternative stable states.

microbiomeecologybistabilitygut-bacteriadysbiosisreaction-diffusionlotka-volterra

2D · HTML5 Canvas 2D · 60 FPS target · runs fully client-side, no install

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