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🧪 3D Computational Chemistry: Molecular Dynamics

A real molecular-dynamics engine in 3D: atoms interact through a genuine pairwise Lennard-Jones potential integrated with velocity-Verlet, with bond strength, target temperature (a Berendsen thermostat) and simulation speed as live controls, and a readout of kinetic/potential/total energy, instantaneous temperature and cluster stability.

Molecular Biology3DAdvanced60 FPS⇄ 2D version
3d-computational-chemistry-explainer ↗ Open standalone
⚙ Under the hood

A real molecular-dynamics engine in 3D: atoms interact through a genuine pairwise Lennard-Jones potential integrated with velocity-Verlet, with bond strength, target temperature (a Berendsen thermostat) and simulation speed as live controls, and a readout of kinetic/potential/total energy, instantaneous temperature and cluster stability.

computational chemistrymolecular dynamicsLennard-Jones potentialvelocity Verletthermostatmolecular biology

3D · Three.js / WebGL renderer · 60 FPS target · runs fully client-side, no install

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