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🧫 Synthetic Biology Chassis & Biofoundries

Development and engineering of synthetic organisms as well as the use of automated biofoundries for their production and manipulation.

15 simulations60 fps real-time0 install steps
Recoded Genome 2D: Engineering a Virus-Resistant MicrobeNew📱Recode a microbe's TAG stop codons genome-wide on an interactive 2D genome ring, then decide… Unnatural Base Pair Genetic Firewall 2D: X:Y Retention ModelNew📱A 2D schematic model of a semisynthetic organism carrying an engineered X:Y unnatural base… Directed Evolution of a Synthetic Gene Circuit — 2D ModelNew📱Interactive 2D model of directed evolution on a synthetic BioBrick-style gene circuit: watch… Biofoundry Validation Plate: Z′-Factor Assay QC Simulator 2DNew📱2D top-down companion to the 3D biofoundry validation-plate simulator: tune well noise,… Genetic Code Expansion: Amber Suppression RaceNew📱Watch ribosomes race an orthogonal ncAA-charged suppressor tRNA against release factor 1 at… Biofoundry Validation Plate: Z′-Factor Assay QC SimulatorNew📱An interactive 3D validation-plate simulator: tune well-to-well noise, control signal window… Genetic Code Expansion: Amber Suppression RaceNew📱Watch ribosomes race an orthogonal ncAA-charged suppressor tRNA against release factor 1 at… Directed Evolution of a Synthetic Gene CircuitNew📱Evolve a population of synthetic BioBrick-style gene circuits — promoter strength, RBS… Semisynthetic Organism: Unnatural Base Pair Genetic FirewallNew📱A rotating 3D DNA helix carries an engineered X:Y unnatural base pair alongside natural… Recoded Genome: Engineering a Virus-Resistant MicrobeNew📱Recode a microbe's TAG stop codons genome-wide, then decide when it is safe to delete… Biocontainment Kill-Switch Genetic CircuitNew📱This simulation models a genetic circuit designed to induce the death of genetically… Minimal Genome Chassis Cell DesignNew📱Design a minimal synthetic genome for chassis cells used in biomanufacturing processes,…
Automated Biofoundry DNA Assembly RobotNew📱Experience the automated DNA assembly process in a biofoundry using robots and advanced… Cell-Free Protein Synthesis SystemNew📱This simulation provides a platform for rapidly prototyping protein production using… Metabolic Pathway Flux Balance OptimizationNew📱This simulation focuses on optimizing the flux through metabolic pathways to maximize…
About the category

Synthetic Biology Chassis & Biofoundries

Development and engineering of synthetic organisms as well as the use of automated biofoundries for their production and manipulation.

Three.js · WebGL 60 FPS CC BY 4.0
Quick facts
15interactive simulations in this category
⚡runs at 60 FPS in any modern browser
🌐English, Ukrainian, Polish, Spanish, German, Japanese, Italian, Portuguese (Brazil), French, Arabic, Dutch, Chinese, Korean, Hindi, Turkish, Vietnamese, Russian, Indonesian, Persian, Bengali, Thai, Filipino, Swahili, Urdu, Malay, Tamil, Hebrew, Greek, Punjabi, Amharic, Burmese, Khmer, Georgian, Nepali, Mongolian, Armenian, Sinhala, Lao, Czech, Romanian, Hungarian, Bulgarian, Swedish, Danish, Finnish, Norwegian, Slovak, Croatian, Serbian, Slovenian, Lithuanian, Latvian, Estonian, Icelandic, Albanian, Macedonian, Bosnian, and Maltese
🎓CC BY 4.0 — free for classrooms and LMS embeds

Frequently asked questions

Do I need to install anything to run Synthetic Biology Chassis & Biofoundries simulations?▾

No. Everything runs entirely in your browser — no downloads, plugins or accounts. Works in Chrome, Firefox, Edge and Safari; most simulations also work on mobile.

Can I use these simulations for teaching?▾

Yes — all content is free for educational use under CC BY 4.0. Link to any simulation directly or embed it in your LMS with an iframe; no API key required.

Are the models scientifically accurate?▾

They use the same mathematical formulations as professional software, integrated numerically in real time. Each simulation lists its algorithms, and many link to an article explaining the mathematics.

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