DNA Sequencing — Alignment, SNPs & Genome Assembly

Mode:

Error Rate (%): 2 Coverage Depth (×): 20 Read Length (bp): 100

N50—

Aligned Reads—

SNPs Found—

Assembly %—

Coverage—

Smith-Waterman
score(i,j) = max(diag+sub, up−gap, left−gap, 0)
Coverage c = N·L/G
N50: contigs covering ≥50% of assembly