🧬 Bioinformatics

Bioinformatics: Sequence Alignment DP-Matrix ExplorerNewWatch the Needleman-Wunsch dynamic-programming matrix build itself into a 3D score landscape… Biomarker Panel Search SpaceNewLive-timed computational-complexity lab for systems biology: benchmark real O(n) mean, O(n… De Bruijn Genome AssemblyNewBreak overlapping DNA reads into k-mers, watch a de Bruijn graph build node by node and edge… Guide-RNA Off-Target Risk ScannerNewDesign a CRISPR guide RNA and run a genome-wide sequence-alignment search live: compare a… Genome Sequencing — Shotgun Assembly SimulatorNewInteractive shotgun DNA sequencing simulator: shatter a genome into overlapping reads, tune… Metagenomics Pipeline SimulatorNewInteractive shotgun-metagenomics pipeline: sample a mixed community of environmental DNA… Sequence Alignment Visualizer: Needleman-Wunsch Dynamic ProgrammingNewWatch the Needleman-Wunsch dynamic-programming matrix for global DNA sequence alignment fill… Sequence Alignment: DNA Matching in 3DNewExplore how bioinformatics algorithms align DNA sequences: watch a live 3D… Sequence Alignment Explorer: Needleman-Wunsch in 3DNewWatch two DNA sequences get globally aligned in real time: explore the 3D… Genome Read-Alignment ExplorerNewWatch a sliding-window sequence-alignment algorithm scan a 3D genome for the best match to a… Bioinformatics Pipeline: Read QC, Alignment & Variant CallingNewWatch simulated DNA reads flow through a bioinformatics pipeline in 3D: quality filtering,… Bioinformatics Pipelines: Sequencing and AnalysisNewWatch a 3D sequencing pipeline turn raw reads into an aligned genome pileup: tune read… Mass Spec Protein IdentifierNewRun a 3D mass spectrometry proteomics workflow — digest a protein, tune length, missed… Single-Cell Sequencing ExplorerNewRun a 3D single-cell RNA-seq pipeline — encapsulate cells in droplets, tune loading… Single-Cell Multi-omics Integration ExplorerNewIntegrating scRNA-seq, ATAC-seq, and spatial assays: data models, alignment, denoising,… Genomics Pipeline Flow SimulatorNewRaw sequencing reads flow through a pipeline graph — QC, alignment, variant calling,… Spatial Proteomics Tissue MapNewA grid of tissue coordinates lights up with protein expression intensity as an… Spatial Multi-Omics MapNewA tissue-coordinate grid captures transcriptomic and proteomic signal jointly at single-cell… Metabolic Flux Network SimulatorNewMetabolite nodes exchange flux along a reaction network toward a biomass objective: tune… Biofoundry Design-Build-Test-Learn SimulatorNewAn automated biofoundry cycles constructs through Design-Build-Test-Learn stage nodes: tune… Cell-Free Biomanufacturing SimulatorNewRibosomes and enzyme cascades in a cell-free extract bind mRNA template sites and translate… Genomic Cohorts: Understanding Population-Level GeneticsNewExplore a 3D Manhattan-plot landscape where pillar height encodes statistical significance… Cell Atlas Overview: Building Reference Maps of Human CellsNewInteractive 3D point-cloud of single-cell atlas construction: adjust cluster count, batch… Computational Biology та обчислювальна біологіяNewComputational Biology: genomics, proteomics, drug discovery — visualized here as a… Bioinformatics Pipeline SimulationNewThis simulation models a bioinformatics pipeline used to analyze biological data, from… Bioinformatics SimulatorNewThis simulation allows users to explore the core principles of bioinformatics by analyzing… Computational BiologyNewThis simulation demonstrates the use of computational methods in biological research. It… BraTS Brain Tumor Segmentation — Dice Score ExplorerNewAdjust a simulated AI tumor-segmentation region against a fixed ground-truth brain tumor… CheXpert Uncertainty LabNewSet simulated confidence scores across five chest X-ray findings and switch between… ICU Organ-Failure Severity Score CalculatorNewScore six organ systems on the standard published SOFA scale and see the live 0-24 total… Skin Lesion ABCDE Risk-Score SimulatorNewAdjust Asymmetry, Border, Color, Diameter and Evolution sliders to see a procedurally-drawn… Lung Nodule Lung-RADS Risk ClassifierNewSimulate how a CT-detected lung nodule is triaged using the real published Lung-RADS… ECG Waveform Feature Classifier SimulatorNewAdjust heart rate, QRS duration, PR interval and ST elevation to watch a stylized ECG… Histopathology Metastasis Detection & pN Staging SimulatorNewSimulate how whole-slide-image AI trained on datasets like CAMELYON flags tumor-positive… Molecular Docking: Ligand Binding SearchNewInteractive 3D lab where a small ligand molecule tumbles through many trial poses inside a… De Novo Protein Design LabNewInteractive 3D simulator where a residue chain begins as scrambled noise and a… DNA SequencingNewSmith-Waterman sequence alignment, SNP detection and bioinformatics algorithms for DNA…