The 3D version assigns every protein parcel the same single shear rate and evaluates one closed-form alignment curve along the barrel axis, regardless of where a parcel sits in the cross-section. This 2D version is a genuinely different, independently-computed model: it solves an advection-reaction-diffusion PDE on a length × radius grid, so shear, temperature and alignment all vary across the channel's radius as material flows downstream:
Local shear: γ̇(r) = γ̇_wall · (r/R) (drag-flow profile: 0 at core, max at wall)
Alignment PDE: ∂S/∂t = −u·∂S/∂x + α·γ̇(r)·(1−S) − S/τ(T) + D_S·∂²S/∂r²
Heat PDE: ∂T/∂t = −u·∂T/∂x + D_T·∂²T/∂r², T(x, wall) = T_zone(x) (forced)
Relaxation: τ(T) = τ0·exp[−β(T−T0)]
The barrel/die wall temperature is a directly-controlled boundary condition, but the channel's core has to catch up to it by radial heat diffusion — exactly like a real extrudate, whose center lags the wall thermally. Because shear vanishes at the centerline (γ̇(0)=0), the reaction term there is pure relaxation (dS/dt = −S/τ), so core material can only align by advecting in from upstream, never by local shear — a real, physically distinct failure mode the 3D single-value model cannot show at all: a well-quenched skin with a mushier, less-aligned core.
- Screw speed (N) — sets the wall shear γ̇_wall linearly; the radial profile then spreads that shear from 0 at the core to the full value at the wall.
- Cook temperature (T) — shortens τ(T) everywhere, but the wall reaches it first — the core only catches up as heat diffuses inward.
- Moisture — lowers melt consistency, trading alignment for a softer, less energy-intensive melt (same Arrhenius-type proxy as the 3D version, for readout consistency).
- Cooling-die temperature — the die-exit wall boundary condition; a colder die quenches the wall's alignment fast, but a mushy, still-hot core can persist several centimeters in if radial diffusion hasn't caught up — visible here as a lighter core streak surviving into the die.
Same real-world subject as the 3D version — this is the cook-then-quench mechanism plant-based "meat" extruders use to turn isotropic soy/pea protein into muscle-like fiber — but reached here through a resolved radial field instead of one global value broadcast to every parcel.